Research guide
Bulk RNA-seq
An opinionated bulk RNA-seq guide for human and mouse studies, split into upstream work up to the count table and downstream analyses that help you extract more biology after differential expression.
Read the guideLearning by doing
Practical guides.
Longer guides for understanding the choices behind a workflow, with code and examples to work through.
Companion repositories
More worked examples
My causal-inference and multi-omics notes live alongside runnable examples on GitHub.
Find the notebooks